Objective: Maintain and restore instream physical habitat

(Summary information is from Southeast Aquatic Resources Partnership's Southeast Aquatic Habitat Plan )

Physical habitats are the structural elements that make streams, rivers, lakes, reservoirs and wetlands suitable for aquatic species. Examples of physical habitat in southeastern waters include stream channel morphology, substrate composition (gravel, rocks, sediment, etc.), benthic contours of lakes and reservoirs, aquatic vegetation, shoreline vegetation, overhead canopy cover, and woody debris. Physical habitat plays an important role in healthy ecosystems, providing shelter, spawning sites, nursery areas, and foraging areas for fish and other aquatic animals. It also affects water quality and energy production. When physical habitat is changed by natural storm or flood events, aging and decomposition, or anthropogenic activities, the health of the waterbody may change suddenly, slowly, or sometimes in stages following a ‘domino’ effect. Not all changes are bad, but some activities such as draining wetlands or rerouting streams through pipes or channels can result in destruction of physical habitat. Of major importance has been the large-scale loss of wetland habitats such as forested large-river floodplain, oxbow, and backwater areas, coastal marsh and seagrass beds. The structural elements of many streams and rivers, degraded by an assortment of land use practices or natural events, can be improved
using stream restoration techniques. In reservoirs, managers add new structure to offset the loss of the original woody debris, but it is difficult to add enough to maintain optimum fisheries. Reservoirs also tend to develop problems related to the presence or absence of aquatic vegetation due to water level fluctuations. The challenge is to prevent the destruction of physical habitat and promote its restoration and improvement in a manner that meets both ecological and human needs.

Instream habitat (boulder clusters) on the Pedernales River ( photo from TPWD) Boulder Complex

Important functions and benefits of healthy instream habitat:

  • Fish and wildlife habitat
  • Breeding and nursery habitat for fish, amphibians, and other organisms
  • Area of increased species diversity
  • Food source for terrestrial and aquatic organisms
  • Bank stabilization and erosion control
  • Recreational and ecotourism opportunities

Instream Physical Habitat BMPs

Planning and Managment

  1. Communication
  2. Conservation easement
  3. Conservation education
  4. Conservation development
  5. Develop or protect a riparian buffer zone
  6. Ordinances
  7. Riparian setbacks
  8. TPWD Landowner Incentive Program
  9. Watershed conservation plan

Protection and Restoration of Instream Habitats

  1. Boulder clusters
  2. Conservation easement
  3. Cross vanes
  4. Culvert design
  5. Designate paths and access points
  6. Develop or protect a riparian buffer zone
  7. Fencing riparian areas and managing livestock access
  8. Fish passage
  9. Floating log cover
  10. Large wood and log jams
  11. Lunker structure
  12. Protection or revegetation of native species
  13. Riparian setbacks
  14. Rock vortex weir (porous wiers)
  15. Stream crossings
  16. Step pools
  17. Vanes
  18. Wing deflectors

Revegetation and Erosion Control (for streambanks and riparian areas)

  1. Bank toe protection and revetments
  2. Brush or vegetation mats
  3. Brush layering
  4. Branch packing
  5. Coir fiber logs
  6. Cuttings, transplants, and seeding
  7. Erosion control blanket and mulches
  8. Fascines, bundles, wattles
  9. Grazing control in riparian areas
  10. Live siltation
  11. Live slope grating
  12. Protection or revegetation of native species
  13. Rootwad composites
  14. Sediment barriers (barriers, berms, fences, and wattles)
  15. Vegetated cribbing

Exotic Species

  1. Texas Invasives
  2. Aquatic Invasives
  3. Stopping Invasives

Agricultural

  1. Alternate shade sources
  2. Alternate watering sources and supplemental feeding
  3. Cuttings, transplants, and seeding
  4. Develop or protect a riparian buffer zone
  5. Fencing riparian areas and managing livestock access
  6. Grazing control in riparian areas
  7. Proper application of chemicals in upland areas
  8. Protection or revegetation of native species

Construction and Development

  1. Conservation development
  2. Ordinances
  3. Protection or revegetation of native species
  4. Riparian setback
  5. Sand and gravel mining
  6. Silt barriers
  7. Stream crossings

Instream Physical Habitat Bibliography

  • Bond and Lake. 2003. Local habitat restoration in streams: constraints on the effectiveness of restoration for stream biota. Ecological Management & Restoration 4: 193-198.
  • Dewson et al. 2007. A review of the consequences of decreased flow for instream habitat and macroinvertebrates. Journal of the North American Benthological Society 26: 401-415.
  • Drudgeon et al. 2006. Freshwater biodiversity: importance, threats, status and conservation challenges. Biological Reviews 81: 163-182.
  • Fausch et al. 2002. Landscapes to riverscapes: bridging the gap between research and conservation of stream fishes. BioScience 52: 483-489.
  • Muotka et al. 2002. Long-term recovery of stream habiat structure and benthic invertebrate communities from in-stream restoration. Biological Conservation 105: 243-253.
  • Rabeni and Jacobson. 1993. The importance of fluvial hydraulics to fish-habitat restoration in low-gradient alluvial streams. Freshwater Biology 29: 211-220.
  • Roni et al. 2002. A review of stream restoration techniques and a hierarchical strategy for prioritizing restoration in Pacific Northwest Watersheds. North American Journal of Fisheries Management 22: 1-20.
  • Watters. 1999. Freshwater mussels and water quality: a review of the effects of hydrologic and instream habitat alterations. Proceedings of the First Freshwater Mollusk Conservation Society Symposium 1999: 261-274.